BtaEX6095179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50660105-50660883:-
Coord C1 exon
chr22:50660821-50660883
Coord A exon
chr22:50660285-50660404
Coord C2 exon
chr22:50660105-50660198
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTGCCTGCGTGCTAGACC
3' ss Score
7.31
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGGCCTGGCCGGCCCGTGTGGAATGGCGAGAGGAGTGCAACTGGGCCGGGAAGGACATTGGC
Seq A exon
ACCGAGTGCATGAACTTCGTGAAGTTGCTCCATGCCTACAACCATACCCACTTGCTGGCCTGTGGCACAGGGGCCTTCCACCCAATCTGTGCGTTTGTGGAGGTGGGCCAGCGGCTGGAG
Seq C2 exon
GAGCCCATGCTCCGGCTGGACCCTCGAAGGCTGGAGGATGGCAAGGGCAAGAGTCCTTATGACCCCAGGCATCGGGCTGCCTCCGTGCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.406
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.2=100)
A:
PF0140314=Sema=FE(21.9=100)
C2:
PF0140314=Sema=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAATGGCGAGAGGAGT
R:
CCCGATGCCTGGGGTCATAAG
Band lengths:
122-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]