HsaEX7002010 @ hg38
Exon Skipping
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50270433-50271181:+
Coord C1 exon
chr3:50270433-50270495
Coord A exon
chr3:50270890-50271009
Coord C2 exon
chr3:50271088-50271181
Length
120 bp
Sequences
Splice sites
3' ss Seq
CACACCTCCAACCCTACTAGACT
3' ss Score
4.12
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTGGCCTGGCCGGCCCCTGTGGAATGGCGAGAGGAGTGCAACTGGGCAGGGAAGGACATTGGT
Seq A exon
ACTGAGTGCATGAACTTCGTGAAGTTGCTGCATGCCTACAACCGCACCCATTTGCTGGCCTGTGGCACGGGAGCCTTCCACCCAACCTGTGCCTTTGTGGAAGTGGGCCACCGGGCAGAG
Seq C2 exon
GAGCCCGTCCTCCGGCTGGACCCAGGAAGGATAGAGGATGGCAAGGGGAAGAGTCCTTATGACCCCAGGCATCGGGCTGCCTCCGTGCTGGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171-'16-15,'16-13,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.365
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.5=100)
A:
PF0140314=Sema=FE(24.4=100)
C2:
PF0140314=Sema=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCCCCTGTGGAATGG
R:
CCCGATGCCTGGGGTCATAAG
Band lengths:
130-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains