DreEX6050296 @ danRer10
Exon Skipping
Gene
ENSDARG00000011672 | sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:ZFIN;Acc:ZDB-GENE-081105-78]
Coordinates
chr8:26576276-26586071:-
Coord C1 exon
chr8:26586009-26586071
Coord A exon
chr8:26576480-26576599
Coord C2 exon
chr8:26576276-26576369
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTGCAGACG
3' ss Score
11.35
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCTACTGGCCAGCGCCTGTCGACTGGAGAGAAGAGTGCAACTGGGCCGGGAAAGACATCAAT
Seq A exon
ACGGATTGCGTAAACTATGTGAAAGTGCTACACCACTATAATCGAACTCACCTATACGCCTGTGGTACGGGGGCTTTCCACCCCACCTGTGCTTATGTGGAGGTGGGACAGAAAATGGAG
Seq C2 exon
GATCATGTATTTAGAATCGATCCCTCTCTTGTAGAAGATGGAAAAGGGAAGAGTCCATATGACCCACGTCACACATCAGCTTCTGTTCTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011672-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.219
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCGACTGGAGAGAAGA
R:
AGAACAGAAGCTGATGTGTGACG
Band lengths:
138-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]