GgaEX7007687 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2654025-2654487:+
Coord C1 exon
chr12:2654025-2654087
Coord A exon
chr12:2654191-2654310
Coord C2 exon
chr12:2654385-2654487
Length
120 bp
Sequences
Splice sites
3' ss Seq
AACCATCCCCCTTCGAGCAGACC
3' ss Score
4.8
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATCTCCTGGCCGGCACCCAGGGCGCAGGTGGAGCACTGCCGGCTGGCAGGCAAGGACGTGGAG
Seq A exon
ACCGAGTGTGCCAACTTCATCCGCCTCCTCCAACCCTACAACAGCAGCCACGTGTTGGCCTGCGGGACCGGCGCCTATCAGCCCGTCTGCGCCTTCGTGCAGCTGGGAGCCCACGGGAAG
Seq C2 exon
GGTCCTGGGGTCCCCGTGATACGGCTGCTGAGCCACTCCCTTCAGTCGGGGCGAGGCCGGTGCCCGTACAGCCCCCGGCAGCCCTTTGCTGCACTGCTGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGGCAAGGACGTG
R:
GACCAGCAGTGCAGCAAAGG
Band lengths:
123-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]