MmuEX6040489 @ mm9
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:32034016-32034797:+
Coord C1 exon
chr14:32034016-32034078
Coord A exon
chr14:32034307-32034426
Coord C2 exon
chr14:32034707-32034797
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTCCTTTCCCGCAGACG
3' ss Score
14.28
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCTTGTGGCTGCCACAGCCAGGACAGAAGGTGGAATGTGTCCGCAAGGGAAAAGACCCTTTG
Seq A exon
ACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGGCCTGTGGCACAGGAGCCTTCCAACCCATCTGCACCTTCATCACAGTGGGGCATCGAGGGGAG
Seq C2 exon
CATGTGCTCCGCTTGGATGCTAGCAGCGTCGAGAATGGAAGGGGGCGTTGCCCACATGAGCCCAGCCGACCCTTCGCCAGCACCTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.355
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGGACAGAAGGTGGAAT
R:
CTACAAAGGTGCTGGCGAAGG
Band lengths:
138-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: