BtaEX6094870 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:49001815-49002502:+
Coord C1 exon
chr22:49001815-49001877
Coord A exon
chr22:49002030-49002149
Coord C2 exon
chr22:49002412-49002502
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCATCTGCCTTCTCCCCAGGTG
3' ss Score
11.48
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCCTGTGGCCACCACAGCCCGGACAGAGAGAGGAGTGCGTTCACAAGGGAAGAGATCCTTTG
Seq A exon
GTGGAGTGCGCCAACTTTGTGCGGGTGCTGCACCCCCACAACCGGACCCACCTGCTGGCGTGTGGCACTGGCGCCTTCCAGCCCACCTGTGCCCTCCTTGCTGTTGGGCATCGTGGAGAG
Seq C2 exon
CATGTGCTCCATCTGGAGCCCCGAAGCATGGAAAGTGGGAGGGGGAGATGCCCACACGAGCCCAGTCGTCCCTTCGCCAGCACCTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.000 C2=0.645
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCCCGGACAGAGAGAG
R:
CTACAAAGGTGCTGGCGAAGG
Band lengths:
141-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]