GgaEX7007704 @ galGal4
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr12:3121990-3123761:-
Coord C1 exon
chr12:3123699-3123761
Coord A exon
chr12:3122353-3122472
Coord C2 exon
chr12:3121990-3122086
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTTCCTGTCCCCAGACC
3' ss Score
12.01
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATCTACTGGCCGCCACTGCCTGGACAGACGGAGGAGTGTTTTCGGAAGGGGAAGGACCCAGCA
Seq A exon
ACCGACTGTGCCAACTACGTCCGCCTGCTGCAGCCCTACAACAGAACACACCTGCTGGCCTGCGGGACGGGTGCCTGCCACCCCGTCTGCACCTTCATCTACGTGGGGCACCGCGGTGAG
Seq C2 exon
ACCCAGCATGCCTTCAGCTTGGACCCTGGTAGCACGGAGAGTGGTCGTGGCAGGTGCCCACATGAGCCTGACCGTGCATTTGCCAGCACCATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'1-5,'1-3,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.515
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(7.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACTGGCCGCCACTGC
R:
GATGATGGTGCTGGCAAATGC
Band lengths:
159-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]