RnoEX0079299 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7306491-7307265:+
Coord C1 exon
chr16:7306491-7306553
Coord A exon
chr16:7306783-7306902
Coord C2 exon
chr16:7307175-7307265
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACCCATTTCTTCCCCTACAGACC
3' ss Score
10.72
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCTTGTGGCCGCCGCAGCCCGGACAGAAGGTGGAATGTGTCCGAAAGGGAAAAGACCCTTTG
Seq A exon
ACCGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCACAACCGGACCCATCTGCTGGCCTGCGGCACTGGCGCCTTCCAGCCCATCTGCACCTTCATCACAGTGGGGCATCGGGGGGAG
Seq C2 exon
CATGTGCTCCACTTGGATCCTAGCAGCATCGAAAATGGAAGGGGGCGTTGCCCACACGAGCCCAGCCGTCCCTTCGCCAGTACCTTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.516
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.5=100)
A:
PF0140314=Sema=FE(8.7=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCGGACAGAAGGT
R:
ACAAAGGTACTGGCGAAGGGA
Band lengths:
138-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]