HsaEX6056424 @ hg19
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:30400]
Coordinates
chr3:52475835-52476637:-
Coord C1 exon
chr3:52476575-52476637
Coord A exon
chr3:52476201-52476320
Coord C2 exon
chr3:52475835-52475925
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCCTTCTCCCCGCAGACA
3' ss Score
15.08
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTCCTGTGGCCACCGCAGCCAGGACAGAGGGAGGAGTGTGTTCGAAAGGGAAGAGATCCTTTG
Seq A exon
ACAGAGTGCGCCAACTTCGTGCGGGTGCTACAGCCTCACAACCGGACCCACCTGCTAGCCTGTGGCACTGGGGCCTTCCAGCCCACCTGTGCCCTCATCACAGTTGGCCACCGTGGGGAG
Seq C2 exon
CATGTGCTCCACCTGGAGCCTGGCAGTGTGGAAAGTGGCCGGGGGCGGTGCCCTCACGAGCCCAGCCGTCCCTTTGCCAGCACCTTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.117 C2=0.423
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(18.0=100)
A:
PF0140314=Sema=FE(35.1=100)
C2:
PF0140314=Sema=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAGGACAGAGGGAGG
R:
TATGAAGGTGCTGGCAAAGGG
Band lengths:
138-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)