MmuEX6015929 @ mm10
Exon Skipping
Gene
ENSMUSG00000063531 | Sema3e
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:MGI Symbol;Acc:MGI:1340034]
Coordinates
chr5:14162188-14210384:+
Coord C1 exon
chr5:14162188-14162247
Coord A exon
chr5:14164059-14164178
Coord C2 exon
chr5:14210291-14210384
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTGAATCCTCTTTAGAAT
3' ss Score
8.22
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATATACTGGCCGAGCACAGCAGTAAAGGTAGAAGAATGCATAATGAAAGGAAAAGACGCA
Seq A exon
AATGAGTGTGCCAATTATATCCGGGTTTTGCATCACTACAACAGGACACACCTTCTGACCTGTGCTACTGGAGCTTTTGATCCACACTGTGCCTTCATCAGAGTCGGGCACCATTCAGAG
Seq C2 exon
GAACCCCTGTTTCACCTGGAGTCACACAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAACTCCTCCTTTGTGTCCACGCTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063531-'6-10,'6-8,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACTGGCCGAGCACAGCA
R:
CAACTAGCGTGGACACAAAGGA
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types