HsaEX6008738 @ hg19
Exon Skipping
Gene
ENSG00000170381 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:10727]
Coordinates
chr7:83047706-83098618:-
Coord C1 exon
chr7:83098559-83098618
Coord A exon
chr7:83095798-83095917
Coord C2 exon
chr7:83047706-83047799
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTCCTGCTTTAGGGT
3' ss Score
12
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATACACTGGCCGAGTACAGCTCTAAAAATGGAAGAATGCATAATGAAGGGAAAAGATGCG
Seq A exon
GGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGGACACACCTTCTGACCTGTGGTACTGGAGCTTTTGATCCAGTTTGTGCCTTCATCAGAGTTGGATATCATTTGGAG
Seq C2 exon
GATCCTCTGTTTCACCTGGAATCACCCAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAGCTCCTCCTTCATCTCCACTTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170381-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(11.7=100)
A:
PF0140314=Sema=FE(23.9=100)
C2:
PF0140314=Sema=FE(19.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACTGGCCGAGTACAGCT
R:
CAATTAAAGTGGAGATGAAGGAGGA
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)