BtaEX6026797 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014920 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37305948-37356557:+
Coord C1 exon
chr4:37305948-37306007
Coord A exon
chr4:37309211-37309330
Coord C2 exon
chr4:37356464-37356557
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTCCCGGTTTTTAGAGT
3' ss Score
9.77
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATACACTGGCCAAGTACAGCACTAAAAACAGAAGAATGCATAATGAAAGGAAATGATGCC
Seq A exon
AGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGAACACATCTACTGACCTGCGGGACAGGAGCGTTTGACCCACTCTGTGCCTTCATCAGAGTTGGATACCATTTGGAG
Seq C2 exon
GCTCCCCTTTTTCACCTGGAATCGCACAGATCTGAGAGAGGAAGGGGCAGATGTCCCTTTGATCCCAGCTCCTCCTTCATCTCTACTTTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.3=100)
A:
PF0140314=Sema=FE(8.8=100)
C2:
PF0140314=Sema=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACTGGCCAAGTACAGCAC
R:
AGTAGAGATGAAGGAGGAGCTGG
Band lengths:
146-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]