HsaEX6008738 @ hg38
Exon Skipping
Gene
ENSG00000170381 | SEMA3E
Description
semaphorin 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr7:83418390-83469302:-
Coord C1 exon
chr7:83469243-83469302
Coord A exon
chr7:83466482-83466601
Coord C2 exon
chr7:83418390-83418483
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTCCTGCTTTAGGGT
3' ss Score
12
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ATACACTGGCCGAGTACAGCTCTAAAAATGGAAGAATGCATAATGAAGGGAAAAGATGCG
Seq A exon
GGTGAATGTGCAAATTATGTTCGGGTTTTGCATCACTATAACAGGACACACCTTCTGACCTGTGGTACTGGAGCTTTTGATCCAGTTTGTGCCTTCATCAGAGTTGGATATCATTTGGAG
Seq C2 exon
GATCCTCTGTTTCACCTGGAATCACCCAGATCTGAGAGAGGAAGGGGCAGATGTCCTTTTGACCCCAGCTCCTCCTTCATCTCCACTTTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170381-'9-13,'9-9,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.8=100)
A:
PF0140314=Sema=FE(30.5=100)
C2:
PF0140314=Sema=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACACTGGCCGAGTACAGCT
R:
CAATTAAAGTGGAGATGAAGGAGGA
Band lengths:
154-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains