BtaEX6026936 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44189894-44198584:-
Coord C1 exon
chr4:44198502-44198584
Coord A exon
chr4:44195183-44195392
Coord C2 exon
chr4:44189894-44189951
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTTCTGGGATCCAGCAC
3' ss Score
4.87
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
TTACATGCTCTGGGGAAACTTCCTGGAACCAGGATGGCAGAGTTAAAAGCCAAGTACACCTTGCTGCATGATACCGTGATGAG
Seq A exon
CACACAAGAATCAGAGGTCCAGCTGCTACAGGATGCCAAACGTTTCACTGAGCAAATACAAGAGCAGCAGTTTCACCTGCAGCAAGCTGATAACTTTCCACAGGCGTTCACCACCGAAGTTTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATACAATGCAGTGAAGGAAAGAGAGTTCCACAATCAGTACAGACTGAATAG
Seq C2 exon
CTTAGTGGAAGAAAAAAACCTCATACTAAAGGAATTTGAGAAGATACCTAAGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACATGCTCTGGGGAAACTTC
R:
CCTGGCTTAGGTATCTTCTCAAA
Band lengths:
140-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]