GgaEX1001981 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12558285-12571815:-
Coord C1 exon
chr1:12571733-12571815
Coord A exon
chr1:12565944-12566153
Coord C2 exon
chr1:12558285-12558342
Length
210 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTCTACTCAATGTAGTTT
3' ss Score
3.91
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
Seq A exon
TTTACAGGAATCTGAGATCCAGCTGTTGCAGGAAGCCAAACGTCTTAGTGTAGACCTGGAACAGCAGCAGCATGAACTGGAAAAAGCAGAACAGTTCCCTGAAGAATCTTCCAGTGAAGTCTGCCGAATAAGGCAACAGCTTCTTAATTGCCAAAATGAGTACAACGCTATTAAAGAAAGAGAGCATGAAATTCAGTTCAGGATAAAATG
Seq C2 exon
TTTGCAAGAAGAGAAAAGACTTCTGGAAAAAGAATATGAAAGAATTCCAAAGCAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTGGAAAACTCACCA
R:
ACCTTGCTTTGGAATTCTTTCAT
Band lengths:
137-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]