GgaEX1001981 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13713772-13727302:-
Coord C1 exon
chr1:13727220-13727302
Coord A exon
chr1:13721431-13721640
Coord C2 exon
chr1:13713772-13713829
Length
210 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTCTACTCAATGTAGTTT
3' ss Score
3.91
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CTATTTTCTGCTGGAAAACTCACCAGCTCCAGAGTAGCTGAGCTGAAGGCAAAGTACAACCTGCTGCATGAAACTGTGAGAAG
Seq A exon
TTTACAGGAATCTGAGATCCAGCTGTTGCAGGAAGCCAAACGTCTTAGTGTAGACCTGGAACAGCAGCAGCATGAACTGGAAAAAGCAGAACAGTTCCCTGAAGAATCTTCCAGTGAAGTCTGCCGAATAAGGCAACAGCTTCTTAATTGCCAAAATGAGTACAACGCTATTAAAGAAAGAGAGCATGAAATTCAGTTCAGGATAAAATG
Seq C2 exon
TTTGCAAGAAGAGAAAAGACTTCTGGAAAAAGAATATGAAAGAATTCCAAAGCAAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTGGAAAACTCACCA
R:
ACCTTGCTTTGGAATTCTTTCAT
Band lengths:
137-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]