BtaEX6026937 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009341 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr4:44187878-44195392:-
Coord C1 exon
chr4:44195183-44195392
Coord A exon
chr4:44189894-44189951
Coord C2 exon
chr4:44187878-44188054
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTGCAGCTT
3' ss Score
11.72
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CACACAAGAATCAGAGGTCCAGCTGCTACAGGATGCCAAACGTTTCACTGAGCAAATACAAGAGCAGCAGTTTCACCTGCAGCAAGCTGATAACTTTCCACAGGCGTTCACCACCGAAGTTTCCAAAATGAGAGAACAACTTCTCAAGTATCAAAATGAATACAATGCAGTGAAGGAAAGAGAGTTCCACAATCAGTACAGACTGAATAG
Seq A exon
CTTAGTGGAAGAAAAAAACCTCATACTAAAGGAATTTGAGAAGATACCTAAGCCAGGA
Seq C2 exon
GAAATGGAGAAGAAGATGAGACTATTGAGAGAAAGCACTGAAGAATTACGTAAGGAAGTAATGCAGAAGAAATTAGAAATTAAAAATTTACGGGAAGATTTGACATCTAAGCAAAAGCAATTACTAAAGGAGCAGAAGGAGCTAGAAGAACTGCTTGAGTATCAGGTCACCTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009341-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCACCACCGAAGTTTCCA
R:
TCAGTGCTTTCTCTCAATAGTCTCA
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]