GgaEX6000480 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12557603-12566153:-
Coord C1 exon
chr1:12565944-12566153
Coord A exon
chr1:12558285-12558342
Coord C2 exon
chr1:12557603-12557779
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGATTTTCCTGCAGTTT
3' ss Score
8.59
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TTTACAGGAATCTGAGATCCAGCTGTTGCAGGAAGCCAAACGTCTTAGTGTAGACCTGGAACAGCAGCAGCATGAACTGGAAAAAGCAGAACAGTTCCCTGAAGAATCTTCCAGTGAAGTCTGCCGAATAAGGCAACAGCTTCTTAATTGCCAAAATGAGTACAACGCTATTAAAGAAAGAGAGCATGAAATTCAGTTCAGGATAAAATG
Seq A exon
TTTGCAAGAAGAGAAAAGACTTCTGGAAAAAGAATATGAAAGAATTCCAAAGCAAGGT
Seq C2 exon
GAAGCAGATAAGAAAATGAGAAAAATGAAAGAGGAGTGTGATGAGCTCCACAAAGAAGTAATCCAAAGGAAAGCAGAAGTTAATGCAATGAAAGAAGACATTTCATCCAAGCAGGAGCTGATGCTAATAGATAAGAAGGAAGTGGAAAAGCTTCTGGAGGACCAGGATAGTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'8-10,'8-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.300 C2=0.305
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAACAGCTTCTTAATTGCC
R:
TGTGGAGCTCATCACACTCCT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]