DreEX0019417 @ danRer10
Exon Skipping
Gene
ENSDARG00000004794 | ccdc146
Description
coiled-coil domain containing 146 [Source:ZFIN;Acc:ZDB-GENE-041210-217]
Coordinates
chr4:20462962-20466857:+
Coord C1 exon
chr4:20462962-20463254
Coord A exon
chr4:20465398-20465455
Coord C2 exon
chr4:20466681-20466857
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTTCTGCTTTTTAGTCT
3' ss Score
8.03
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCTTCTCCACTGGAAAGATCAGCGTGGAAAAAGTGGCTCGTCTTAAAGCCAGTTTCAACCTCTTAAATGAAACTCTGAGAAGTTCTCAGGACTCTGAAATGCAATTGCTCCTGGAGGCGAAGACCTTGCGCATGACATTAGAGCAGCAAAGGCAGGAGCTGGAGAATGCTGAACTTTTTCCTGAGGGACCAGACACAGAGGTCAGCAGACTGAAGCAGACACTCCTGCAGTACTACAACCAACTGAAGGAGGACGAAGAAAGAGATTATCAGATGCAATTTCAGCTTGAGTG
Seq A exon
TCTTAAAGAGGAAAAGCTCTATCTTGAGAAAGAATACCAGGATCAACCTAAACAGGCT
Seq C2 exon
GAGCTAGAAAGCAGGTATGCGACCCTGAAGAACAGTTGTGAGGAGGTGAGGAAAGAGGTTCTTAAGCTTAGACAGGAGGTGAGGACTCTAACTGAGAGCATGGAGACTCAACAGAAACATATCAAGAAAGAACAACTTGAACTGGAGGATTTAAAAAATCGTGTTGAGAGCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004794_MULTIEX1-1/9=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.100 C2=0.305
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACTGAAGCAGACACTCC
R:
TCCTCACCTCCTCACAACTGT
Band lengths:
140-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]