MmuEX1005909 @ mm10
Exon Skipping
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21321164-21330749:-
Coord C1 exon
chr5:21330540-21330749
Coord A exon
chr5:21322744-21322801
Coord C2 exon
chr5:21321164-21321340
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATGGTATTTTCTTTTGGCAGCTT
3' ss Score
6.28
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
CACGCAGGAGTCTGAGGTGCAGCTACTGGAGAACGCCAAGCGCTTCACGGAGCAGATCCAGCAGCAGCAGGTCTGTCTGCAGCAGGCCGAAGACTTCCCCAACGTCTTCACCACTGAGGTCTGCAAACTTCGGGAGCAGCTGCTCAAGTACCAAAATGAATACACGGCAGCGCAAGAAAGGGAGTACAATATTCAGTACAGGCTGACTAG
Seq A exon
CTTAACAGAAGAAAAGAGTATCATATTAAAGGAATTTGAGAAGATACCTAAGCCAGGA
Seq C2 exon
GAAATAGAGAAGAAGACGAGGCTCCTGAAAGAAAGCACTGAGGAACTGCGCAAGGAGGTGATTCAGAGGAGACTGGAGATCAAAAACCTGCGGGAAGATGTGGTGCTCAAGCAGAAGCAGCTAGTGAGGGAGCAGAAGGAGCTGGAGGAGCTGATGGAGTATCAGGTTGGCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCTGCAAACTTCGGGAG
R:
TGCTTTCTTTCAGGAGCCTCG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types