BtaEX6027759 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007146 | CPVL
Description
carboxypeptidase, vitellogenic-like [Source:HGNC Symbol;Acc:HGNC:14399]
Coordinates
chr4:67558598-67604560:+
Coord C1 exon
chr4:67558598-67558771
Coord A exon
chr4:67580569-67580751
Coord C2 exon
chr4:67604456-67604560
Length
183 bp
Sequences
Splice sites
3' ss Seq
ATGGCTCAATTTTGTTTCAGGTT
3' ss Score
9.32
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGCCTGAGGATCAAGGTTACTACGGGAAATTTTTGTCCCTCCCCCACGTGAGACAAGCCATCCACGTGGGAAACCAGACTTTTAGTGATGGAGCCAAAGTTGAAAAGTACTTGCGAGAAGATACAGTCAAGTCAGTGAAACCATGGTTAACTGAAATCATGAATAATTACAAG
Seq A exon
GTTCTAATCTACAATGGCCAGCTGGACGTCATTGTGGCAGCTTCCCTAACAGAGCGCTCCTTGATGGCCATGGACTGGAAAGGATCCCAGAAATACAAGAAGGCAGGAAAAAAAGTTTGGAAGATTCTTAAATCTGATCCTGAAGTGGCTGGTTATGTACGGCAAGTGGGTAATTTCTGTCAG
Seq C2 exon
GTAATTGTTCGAGGTGGAGGCCACATTTTGCCCTATGACCAGCCTCTGCGATCTTTTGACATGATTAATCGATTCATTTTTGGAAGAGGATGGGATCCTTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007146-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(14.1=100)
A:
PF0045017=Peptidase_S10=FE(14.8=100)
C2:
PF0045017=Peptidase_S10=PD(6.7=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTTTGTCCCTCCCCCACG
R:
GGATCCCATCCTCTTCCAAAA
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]