RnoEX0024328 @ rn6
Exon Skipping
Gene
ENSRNOG00000009172 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:RGD Symbol;Acc:1563609]
Coordinates
chr4:84026852-84081155:-
Coord C1 exon
chr4:84080982-84081155
Coord A exon
chr4:84052309-84052491
Coord C2 exon
chr4:84026852-84027102
Length
183 bp
Sequences
Splice sites
3' ss Seq
AGGGTGGGATTTCATTTCAGGTT
3' ss Score
5.92
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAACCCGAGGACCAAAGTTACTTTTCGAAATTCTTGTCACTCCCACAAGTGAGACAAGCCATCCATGTGGGAAACCGGAACTTCAGTGATGGTGCTGAGGTTGAGAAGTACCTACGAGAGGACACAGTGAAGTCAGTGAAACCCTGGCTAGCTGAGATCATGAATTACTACAAG
Seq A exon
GTTCTCATCTACAATGGCCAACTGGACATCATTGTGGCCGCTGCCCTGACAGAACGCTCCTTGATGACCATGGACTGGAAGGGATCATACGCATACAGAAGGACACATAAAAAGATTTGGAAGATCTTCGAATCTGATGATGAAGTGGCAGGTTATGTGCGGCGCGTGGGTAAATTCCATCAG
Seq C2 exon
GTAATCGTCCGAGGTGGAGGACACATTTTGCCCTATGACCAGCCACTGAGGTCTTTCGATATGATCAATCGCTTCATCTATGACAGAGGATGGGAACCTTATAAATTATAAGCTACTTTCCTGAAACAGGAGTCTTAATCACCAAAGAATATTGTTTTAAAAGACTAAAGATATCATGTAAATTTAAAAATGTTATCTTTTTCATATTTTCAAGGCATTTGTTATCAATAAAAGTTTCCCTGAAACACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009172_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(14.0=100)
A:
PF0045017=Peptidase_S10=FE(14.7=100)
C2:
PF0045017=Peptidase_S10=PD(6.6=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAATTCTTGTCACTCCCACA
R:
AAGGTTCCCATCCTCTGTCAT
Band lengths:
250-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]