DreEX6040523 @ danRer10
Exon Skipping
Gene
ENSDARG00000056480 | cpvl
Description
carboxypeptidase, vitellogenic-like [Source:ZFIN;Acc:ZDB-GENE-031219-2]
Coordinates
chr16:20706753-20709101:+
Coord C1 exon
chr16:20706753-20706926
Coord A exon
chr16:20707234-20707416
Coord C2 exon
chr16:20708796-20709101
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACTGTGATTGTGTCTCTCAGGTG
3' ss Score
9.77
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAACCTCCAGATCAGGAGTATTTTTCTTCATTCGTGACTCTACCAGAGGTTCGACGCTCCATCCATGTTGGGAATCTGACCTTCAACGATGGCTCAGATGTGGAGAAACATCTGCTTCAGGATGTCATGAAGTCCATCAAACCCTGGTTGGGCGTCCTGATGGAGAACTATAGA
Seq A exon
GTGTTAATCTACAGTGGTCAGCTGGATGTGATCGTTGCGGCCCCTCTTACTGAGCGCTTCTTGCCCACCGTGAGCTGGTCTGGAGCAGACGAGTATAAGACCGCAGAGCGATTCCCCTGGAAGGTTCAGCCCAGCGACACTGAAGTCGCAGGATACGTTCGACAAGTCAGAGAGTTCTTTCAG
Seq C2 exon
GTTATTGTCAGGGGAGGCGGGCACATTTTACCTTATGACCAACCAGAGAGATCATTCGACATGATAGACAGATTCCTCTCTACAGATGGATTTACATCTCACTGATAGACTGAGATCAAACATGAAATGTGACCAGTGAATGAATCCGTGTTCACTAGCGTAATGTATATTTCAATGCGATATACCGTGCTCTTATGAAGGCACTGTAATGGTTTATATTTTTTATTAGGCTCTGTTAAGTGTAAGGGCTGTTTTATTGTACATGATTTGAAGATGATTTTTGATTAAAGTATGATTTGAATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056480-'11-16,'11-14,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(14.1=100)
A:
PF0045017=Peptidase_S10=FE(14.8=100)
C2:
PF0045017=Peptidase_S10=PD(6.7=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCATCAAACCCTGGTTGG
R:
GTGCCTTCATAAGAGCACGGT
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]