MmuEX6004421 @ mm9
Exon Skipping
Gene
ENSMUSG00000052955 | Cpvl
Description
carboxypeptidase, vitellogenic-like [Source:MGI Symbol;Acc:MGI:1918537]
Coordinates
chr6:53823373-53875300:-
Coord C1 exon
chr6:53875127-53875300
Coord A exon
chr6:53846418-53846600
Coord C2 exon
chr6:53823373-53823518
Length
183 bp
Sequences
Splice sites
3' ss Seq
ACAGTTGGAATTCATTTCAGGTT
3' ss Score
6.65
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GAACCCAAGGAGCAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGACACAGTGAAGTCGGTGAAGCCCTGGCTGTCTGAGATCATGAATTACTACAAG
Seq A exon
GTTCTCATCTACAATGGCCAACTGGACATCATCGTGGCGGCTGCCCTGACAGAGCGCTCCTTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGATAATGAAGTGGCTGGTTATGTGAGGCGTGTGGGCAAATTCCATCAG
Seq C2 exon
GTAATCGTCCGAGGTGGAGGACACATTTTGCCCTATGACCAGCCAATGAGATCTTTTGATATGATCAATCGCTTCATCTATGACAGAGGATGGGAACCTTATAATTCATAAGATACTTTCCTGAAACAGGAGTCTCAATCACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052955-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045017=Peptidase_S10=FE(32.2=100)
A:
PF0045017=Peptidase_S10=FE(33.9=100)
C2:
PF0045017=Peptidase_S10=PD(15.3=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCTTGACGCTCCCCCAAG
R:
AAGGTTCCCATCCTCTGTCAT
Band lengths:
246-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: