BtaEX6027879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010390 | SRI
Description
Bos taurus sorcin (SRI), mRNA. [Source:RefSeq mRNA;Acc:NM_001075350]
Coordinates
chr4:72778028-72784403:-
Coord C1 exon
chr4:72784334-72784403
Coord A exon
chr4:72778994-72779037
Coord C2 exon
chr4:72778028-72778175
Length
44 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTCTTGATTTAACAGCTT
3' ss Score
8.35
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGACAAATAGATGCTGATGAACTGCAAAGATGCCTGACACAGTCGGGCATTGCTGGAGGATACAAAC
Seq A exon
CTTTTAACCTGGAGACTTGCCGGCTTATGGTTTCAATGCTGGAT
Seq C2 exon
AGAGACATGTCAGGCACAATGGGTTTCAATGAATTTAAAGAACTCTGGGCTGTACTGAATGGCTGGAGACAACACTTTATCAGTTTCGACAGTGATAGGAGTGGAACAGTGGATCCCCAAGAATTGCAGAAGGCCCTGACAACAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010390-'8-8,'8-5,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTGCTGGAGGATACAA
R:
TTGGGGATCCACTGTTCCACT
Band lengths:
143-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]