RnoEX6012537 @ rn6
Exon Skipping
Gene
ENSRNOG00000049780 | Sri
Description
sorcin [Source:RGD Symbol;Acc:1584485]
Coordinates
chr4:23011792-23016221:-
Coord C1 exon
chr4:23016152-23016221
Coord A exon
chr4:23012782-23012825
Coord C2 exon
chr4:23011792-23011939
Length
44 bp
Sequences
Splice sites
3' ss Seq
GTGTACTTTATTTTCAACAGCTT
3' ss Score
7.71
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GACGGACAAATTGATGCTGACGAGTTGCAGCGATGCCTAACTCAGTCTGGCATAGCGGGAGGATACAAAC
Seq A exon
CTTTTAACCTGGAGACTTGTCGCCTTATGGTTTCAATGCTGGAT
Seq C2 exon
AGAGATATGTCTGGCACGATGGGGTTCAGTGAGTTCAGAGAGCTCTGGACTGTGCTGAGTGGCTGGAGACAACACTTCATCAGCTTCGACAGTGATAGGAGTGGGACAGTGGATCCCCAGGAGCTGCAGAAGGCCCTAACCACTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049780-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATAGCGGGAGGATACAA
R:
GGATCCACTGTCCCACTCCTA
Band lengths:
139-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]