HsaEX6008889 @ hg38
Exon Skipping
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:HGNC:11292]
Coordinates
chr7:88209339-88217191:-
Coord C1 exon
chr7:88217122-88217191
Coord A exon
chr7:88210882-88210925
Coord C2 exon
chr7:88209339-88209452
Length
44 bp
Sequences
Splice sites
3' ss Seq
TACTTTTCTTGATTTAACAGCTT
3' ss Score
7.49
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGGCAGATAGATGCTGATGAATTGCAGAGATGTCTGACACAGTCTGGCATTGCTGGAGGATACAAAC
Seq A exon
CTTTTAACCTGGAGACTTGCCGGCTTATGGTTTCAATGCTGGAT
Seq C2 exon
GATTTAGGTTGAGTCCCCAGGCTGTGAATTCAATTGCAAAACGATACAGCACCAATGGAAAGATCACCTTCGACGACTACATCGCCTGCTGCGTCAAACTGAGGGCTCTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(64.5=83.3)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF134991=EF-hand_7=PD(50.0=76.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACACAGTCTGGCATTGCT
R:
TAAGAGCCCTCAGTTTGACGC
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains