DreEX6039387 @ danRer10
Exon Skipping
Gene
ENSDARG00000058593 | sri
Description
sorcin [Source:ZFIN;Acc:ZDB-GENE-040426-1356]
Coordinates
chr16:7333240-7335577:+
Coord C1 exon
chr16:7333240-7333309
Coord A exon
chr16:7333420-7333463
Coord C2 exon
chr16:7335430-7335577
Length
44 bp
Sequences
Splice sites
3' ss Seq
ACTCCTTCTTTGTCTTGCAGCTT
3' ss Score
11.41
5' ss Seq
GATGTATCC
5' ss Score
1.64
Exon sequences
Seq C1 exon
GATGGCCAAATATCTGCAGAAGAACTTCAGGCTTGTTTGACTCAAGCCAATTTCTCTGGTGGCTATAGAC
Seq A exon
CTTTCAACCTTGAGACATGTAGACTGATGATCAGCATGCTTGAT
Seq C2 exon
AGAGACATGTCTTACTCGATGGGCTTCAATGAGTTCAAAGAATTGTGGGCAGTGCTCAATGGCTGGAAGCAGCACTTCATGAGCATTGACAGGGATATGAGTGGCACAGTCGACCCACAGGAAATGAATCAGGCCATTTCCTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058593-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(39.7=100)
A:
PF138331=EF-hand_8=FE(24.1=100)
C2:
PF138331=EF-hand_8=PD(31.0=36.0),PF134991=EF-hand_7=PU(48.3=58.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAATTTCTCTGGTGGCT
R:
CGACTGTGCCACTCATATCCC
Band lengths:
139-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]