BtaEX6028092 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012237 | AEBP1
Description
Bos taurus AE binding protein 1 (AEBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_174839]
Coordinates
chr4:77888778-77891706:-
Coord C1 exon
chr4:77891443-77891706
Coord A exon
chr4:77889387-77889788
Coord C2 exon
chr4:77888778-77888840
Length
402 bp
Sequences
Splice sites
3' ss Seq
TGAATGTGCATCTTGAACAGTGC
3' ss Score
5.42
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GTGCTGTGACCATGGCGGCCCTGCTCGGGGCACCCCTGCTCGGCTGCCTCCTGGTGCTGCTAGCGCTGTGCCCCGGGGGGCGCCCGCAGACGGTGCTGACCGACGACGAGATCGAGGAGTTCCTCGAGGGCTTCCTGTCCGAGCTGGAGTCCGAGCCCCGGGAGGACGACGTGGAGGCCCCACCGCCCCCTGAACCCACCCTTCCTGCCCGCAAACCCCAGACAGGGGGCAAGCCGGGGGCGCGTCCGGGGGTGGCCGAAGAGG
Seq A exon
TGCCTCCGGGAAAAGCTAAAGACAAAGGGAAGAAAGGGAAGAAGGACAAAAGCCCCAAGGCGACCAAGCAGCCCCCGGAGGGGTCCTCTAGGCCTCCCAAAAAACCCAAGGAGAAGCCACCCAAGGAGAAACCTCCCAAAGCCACCAAGAAGCCCAAGGAAAAGCCACCCAAAGCCACCAAGAAGCCTAAGGAGAAGCAGCCCAAGGAGAAGCCCCCCAAGGAGAAGCCCCCCAAGGAGAAGCCCCCCAAGGCCACCAAGAAGCCCAAGGAGAAGCCCCCCAAGGCCACCAAGAGGCCTCTAGCTGGGAAGAAGCTCTCCATCCCAACCCCCTCTGAAAGCCCGCAATGGCCACTGCCCCCACTCCTCAGCCCTGACCACGAGGAACTACCCCAGGAGGGAG
Seq C2 exon
GTGGACCCCTCCCAGATCCCTGGGGGGGTCCAGGAGAAGAGACCGACGTGGAGCACCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012237-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTGACCATGGCGG
R:
AGGCTGGTGCTCCACGTC
Band lengths:
326-728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]