HsaEX0002896 @ hg19
Exon Skipping
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44143960-44147109:+
Coord C1 exon
chr7:44143960-44144517
Coord A exon
chr7:44146145-44146486
Coord C2 exon
chr7:44147038-44147109
Length
342 bp
Sequences
Splice sites
3' ss Seq
CGAGTCTGCATCTTGGACAGTGC
3' ss Score
3.78
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
CTCGGAGCGCCCCGACCACCCCTGAGCCCCTCTGGCTTCGGAGCCCCCCAGCACCCCTTCCCGGGTCCCCTCGCCCACCCTAATCCACTCTCCCTCCCTTTCCCGGATTCCCTCGCTCACCCCATCCTCTCTCCCGCCCCTTCCTGGATTCCCTCACCCGTCTCGATCCCCTCTCCGCCCTTTCCCAGAGACCCAGAGCCCCTGACCCCCCGCGCCCTCCCCGGAGCCCCCCGCGCGTGCCGCGGCCATGGCGGCCGTGCGCGGGGCGCCCCTGCTCAGCTGCCTCCTGGCGTTGCTGGCCCTGTGCCCTGGAGGGCGCCCGCAGACGGTGCTGACCGACGACGAGATCGAGGAGTTCCTCGAGGGCTTCCTGTCAGAGCTAGAACCTGAGCCCCGGGAGGACGACGTGGAGGCCCCGCCGCCTCCCGAGCCCACCCCGCGGGTCCGAAAAGCCCAGGCGGGGGGCAAGCCAGGGAAGCGGCCAGGGACGGCCGCAGAAG
Seq A exon
TGCCTCCGGAAAAGACCAAAGACAAAGGGAAGAAAGGCAAGAAAGACAAAGGCCCCAAGGTGCCCAAGGAGTCCTTGGAGGGGTCCCCCAGGCCGCCCAAGAAGGGGAAGGAGAAGCCACCCAAGGCCACCAAGAAGCCCAAGGAGAAGCCACCTAAGGCCACCAAGAAGCCCAAGGAGAAGCCACCCAAGGCCACCAAGAAGCCCAAAGAGAAGCCACCCAAGGCCACCAAGAAGCCCCCGTCAGGGAAGAGGCCCCCCATTCTGGCTCCCTCAGAAACCCTGGAGTGGCCACTGCCCCCACCCCCCAGCCCTGGCCCCGAGGAGCTACCCCAGGAGGGAG
Seq C2 exon
GGGCGCCCCTCTCAAATAACTGGCAGAATCCAGGAGAGGAGACCCATGTGGAGGCACGGGAGCACCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.788 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTCCCAGAGACCCAGAG
R:
CAGTTATTTGAGAGGGGCGCC
Band lengths:
345-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)