RnoEX0007563 @ rn6
Exon Skipping
Gene
ENSRNOG00000013720 | Aebp1
Description
AE binding protein 1 [Source:RGD Symbol;Acc:1306922]
Coordinates
chr14:86101277-86104222:+
Coord C1 exon
chr14:86101277-86101769
Coord A exon
chr14:86103291-86103629
Coord C2 exon
chr14:86104151-86104222
Length
339 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTCATCCTTGACAGCCC
3' ss Score
7.24
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AGAGGGCGGTCCGCGTGAGAGCTAGCCACGCGGGGTAGGAGCGCCCATTTGCCGCCGGAGCTGGGCTCGCCAGAACCTCTCTCGGAATCCCCTTGAATCTCTCTCCCCCACCCCTTTCTGGATACCCTCGACGTCCACGTTGCTCCCCAGGGTTCCTCACGCCCTTTCCCGCCCCCACGCGGGGCGCCGCCCCTGCCACCCAAGTCCCTGCTCAAGCCCACCCGACTCCCACGCGTGCCCAGAGCCATGGCTGCGGTACGCACCGCATCCCTGCTCTGCGGCCTCTTGGCACTCCTGGCGCTGTGCCCGGAGGGGAGCCCACAGACGGTGCTGACGGACGACGAGATCCAGGAGTTCCTCGAAGGCTTCCTTTCGGAGTTTGAGACCCAGTCCCCGCCCCGGGAGGACGACGTGGAAGCCCAGCCACTTCCCGAACCCACCCAGCGTGCCCGCAAATCCAAGGCAGGGGGCAAGCCGCGGGCAGATGCAGAAG
Seq A exon
CCCCTCCAGAAAAGAACAAAGACAAAGAGAAGAAAGGAAAGAAGGACAAAGGCCCCAAGGCTGCAAAACACCTGGAAGGTTCCACCAGGCCCACCAAGAAACCAAAGGAGAAGCCACCCAAGGCCACCAAGAAGCCCAAAGAGAAGCCACCCAAGGCCACCAAGAAGCCTAAAGAGAAGCCACCCAAGGCCACCAAGAAGCCCAAGGAGAAGCCACCCAAGGCCACTAAGAGGCCCTCGGCAGGAAAGAGATTCTCAACTGTAGCCCCCTTAGAAACGCCGGAGCGTTCACTCACCTCACCCTCCAACCCCGGCACCAGGGAGCTACCAGAGGAGAGAG
Seq C2 exon
GAAGAACCTCCCTGAATACCTGGCAGGGCCAAGGAGAAGAGACCCAAGTGGAGGCCAGGCAGCACCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013720-'0-3,'0-1,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.707 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAAGTCCCTGCTCAAG
R:
GCCTCCACTTGGGTCTCTTCT
Band lengths:
352-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]