MmuEX6083789 @ mm10
Exon Skipping
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5861947-5864895:+
Coord C1 exon
chr11:5861947-5862398
Coord A exon
chr11:5863939-5864277
Coord C2 exon
chr11:5864824-5864895
Length
339 bp
Sequences
Splice sites
3' ss Seq
TGCATCTTCATCCTTGACAGTCC
3' ss Score
7.34
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
AGGAGCGCCCAGTTGCTGCCGGAGCTGGGCCCGCCAGAACCTCTCCTGGAGCCCCTTGCTCTCCTTGAATCTCCCTTTCCCACCGCTTTCTGGATACCCTTGACGCCCACGTTCCTCGCGCCCTTTCCCGCCCCTACGCGGGGCGCTGCCCCTGCCACCCAAGTCCCTGCTCAAGCCCGCCCGGCTCCCGCGCGTGCCCAGAGCCATGGCTCCAGTGCGCACCGCATCCCTGCTCTGCGGCCTCCTGGCACTGCTGACGCTGTGCCCTGAGGGGAACCCACAGACGGTGCTGACGGACGACGAGATCGAGGAGTTCCTCGAAGGCTTCCTTTCGGAGTTGGAGACCCAGTCCCCGCCCCGGGAAGACGACGTGGAAGTCCAGCCGCTTCCCGAACCCACCCAGCGTCCCCGCAAATCCAAGGCAGGGGGCAAGCAGCGGGCAGATGTAGAAG
Seq A exon
TCCCTCCAGAAAAAAACAAAGACAAAGAGAAGAAAGGAAAGAAGGACAAAGGCCCCAAAGCCACAAAACCCCTGGAGGGCTCTACCAGGCCCACCAAGAAACCAAAGGAGAAGCCACCCAAGGCCACCAAGAAGCCCAAGGAGAAACCACCCAAGGCCACCAAGAAGCCCAAGGAGAAGCCACCCAAGGCCACCAAGAAGCCTAAGGAGAAGCCACCCAAGGCCACTAAGAGGCCCTCGGCAGGAAAGAAGTTCTCAACTGTGGCCCCCTTGGAAACGCTGGATCGGTTACTCCCCTCACCCTCCAACCCCAGCGCCCAGGAGCTACCGCAGAAGAGAG
Seq C2 exon
ACACACCCTTCCCAAATGCCTGGCAAGGTCAAGGAGAAGAGACCCAGGTGGAGGCCAAGCAGCCCCGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-'0-8,'0-3,5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.753 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCAAGTCCCTGCTCAAG
R:
CCACCTGGGTCTCTTCTCCTT
Band lengths:
348-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types