BtaEX6028387 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000410 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
Coordinates
chr4:92642972-92643818:-
Coord C1 exon
chr4:92643693-92643818
Coord A exon
chr4:92643395-92643477
Coord C2 exon
chr4:92642972-92643041
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTGAGCCTCCATCTCTGCAGAAT
3' ss Score
7.84
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTGGTCTGGGTCCAATTCCTCGAACTCCCCCCTGTGACTCTGAGGCTCCCCGGGGTCCCCACCCAGGAACTGGCCACCGGAATCGGACAATCTTTTCCCCAGGCCAAGCCGAGGCGCTGGAGAAAG
Seq A exon
AATTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGGAAACTGGCTGCAGCCACCTCTCTGCCCGAGGACACGGTGAGG
Seq C2 exon
ATCTGGTTTTCCAACCGAAGGGCCAAATGGCGCCGACAAGAGAAGCTCAAGTGGGAGATGCAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000410-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.953 A=0.071 C2=0.375
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=39.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGGTCCAATTCCTCGA
R:
ACTTGAGCTTCTCTTGTCGGC
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]