GgaEX1047491 @ galGal3
Exon Skipping
Gene
ENSGALG00000012123 | PAX6_CHICK
Description
NA
Coordinates
chr5:5257891-5259232:-
Coord C1 exon
chr5:5259074-5259232
Coord A exon
chr5:5258288-5258370
Coord C2 exon
chr5:5257891-5258041
Length
83 bp
Sequences
Splice sites
3' ss Seq
GGCAATATTTCTCCTTGCAGAGT
3' ss Score
8.22
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACGGCTGCCCGCAGCAGGAGGGAGGAGGGGAGAACACCAACTCCATCAGCTCCAATGGGGAAGATTCCGATGAGGCCCAGATGAGACTTCAGCTGAAAAGGAAGCTGCAGAGAAATAGGACATCCTTTACCCAAGAGCAAATCGAAGCCCTTGAGAAAG
Seq A exon
AGTTTGAGAGAACCCACTATCCCGATGTGTTTGCGAGAGAGCGACTAGCTGCTAAAATAGACTTGCCTGAAGCAAGGATACAG
Seq C2 exon
GTGTGGTTTTCTAACAGAAGGGCCAAGTGGAGAAGGGAGGAGAAGCTGCGGAACCAGCGGAGACAAGCCAGCAACACTCCCAGCCACATCCCCATCAGCAGTAGTTTCAGCACAAGCGTTTACCAGCCGATCCCACAGCCGACCACCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.920 A=0.579 C2=0.904
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(1.6=8.7),PF0004624=Homeobox=PU(29.8=73.9)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAGCAAATCGAAGCCCT
R:
CTGTGGGATCGGCTGGTAAAC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]