MmuEX6103397 @ mm9
Exon Skipping
Gene
ENSMUSG00000027168 | Pax6
Description
paired box gene 6 [Source:MGI Symbol;Acc:MGI:97490]
Coordinates
chr2:105531722-105532777:+
Coord C1 exon
chr2:105531722-105531880
Coord A exon
chr2:105532351-105532433
Coord C2 exon
chr2:105532627-105532777
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAATCAACTTACTCTTTCAGAGT
3' ss Score
7.31
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTCCATCAGTTCTAACGGAGAAGACTCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCTTTTACCCAAGAGCAGATTGAGGCTCTGGAGAAAG
Seq A exon
AGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAG
Seq C2 exon
GTATGGTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAGAAACTGAGGAACCAGAGAAGACAGGCCAGCAACACTCCTAGTCACATTCCTATCAGCAGCAGCTTCAGTACCAGTGTCTACCAGCCAATCCCACAGCCCACCACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027168-'33-36,'33-35,38-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.926 A=0.584 C2=0.946
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=31.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSMUSP00000016435, ENSMUSP00000087878, ENSMUSP00000106711, ENSMUSP00000106712, ENSMUSP00000106713, ENSMUSP00000106714, ENSMUSP00000106715, ENSMUSP00000106716, ENSMUSP00000106717, ENSMUSP00000115032, ENSMUSP00000118457, ENSMUSP00000121302, ENSMUSP00000121345, ENSMUSP00000122311, ENSMUSP00000128301, ENSMUSP00000133346, ENSMUSP00000133872, ENSMUSP00000133980
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCAGATGCGACTTCAGC
R:
GTGACTAGGAGTGTTGCTGGC
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: