Special

HsaEX0045709 @ hg38

Exon Skipping

Gene
Description
paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
Coordinates
chr11:31793652-31794788:-
Coord C1 exon
chr11:31794630-31794788
Coord A exon
chr11:31794032-31794114
Coord C2 exon
chr11:31793652-31793802
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAATCAACTTACTCTTTCAGAGT
3' ss Score
7.31
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
ATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAATACCAACTCCATCAGTTCCAACGGAGAAGATTCAGATGAGGCTCAAATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCCTTTACCCAAGAGCAAATTGAGGCCCTGGAGAAAG
Seq A exon
AGTTTGAGAGAACCCATTATCCAGATGTGTTTGCCCGAGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAG
Seq C2 exon
GTATGGTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAAAAACTGAGGAATCAGAGAAGACAGGCCAGCAACACACCTAGTCATATTCCTATCAGCAGTAGTTTCAGCACCAGTGTCTACCAACCAATTCCACAACCCACCACACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007372_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCAAATTGAGGCCCTGG
R:
TGTGGTGGGTTGTGGAATTGG
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development