RnoEX0063599 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95723107-95724110:+
Coord C1 exon
chr3:95723107-95723265
Coord A exon
chr3:95723683-95723765
Coord C2 exon
chr3:95723960-95724110
Length
83 bp
Sequences
Splice sites
3' ss Seq
AACAACTTATATTCTTACAGAGT
3' ss Score
6.73
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ACGGCTGCCAGCAACAGGAAGGACAGGGAGAAAACACCAACTCCATCAGCTCCAATGGAGAAGACTCGGATGAGGCTCAAATGCGGCTGCAGCTGAAGCGGAAGCTGCAGAGAAATAGAACATCTTTTACCCAGGAGCAGATTGAGGCTCTGGAGAAAG
Seq A exon
AGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACTAGCAGCCAAAATAGATCTACCTGAAGCAAGGATACAG
Seq C2 exon
GTGTGGTTTTCTAACCGAAGGGCCAAGTGGAGAAGAGAAGAAAAACTGAGGAACCAGAGAAGACAGGCCAGCAACACCCCGAGTCACATCCCTATCAGCAGCAGTTTCAGTACCAGTGTCTACCAGCCAATTCCACAGCCCACCACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410-'21-12,'21-11,22-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=31.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCAGGAGCAGATTGAGGC
R:
GGCTGTGGAATTGGCTGGTAG
Band lengths:
172-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]