BtaEX6060187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004561 | PAX6
Description
Bos taurus paired box 6 (PAX6), mRNA. [Source:RefSeq mRNA;Acc:NM_001040645]
Coordinates
chr15:63360607-63361691:-
Coord C1 exon
chr15:63361533-63361691
Coord A exon
chr15:63360987-63361069
Coord C2 exon
chr15:63360607-63360757
Length
83 bp
Sequences
Splice sites
3' ss Seq
AATGCAACTTACTCTTTCAGAGT
3' ss Score
7.66
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
ATGGCTGCCAGCAGCAGGAAGGAGGGGGAGAGAATACCAACTCCATCAGTTCCAATGGAGAAGATTCAGATGAGGCCCAAATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCCTTTACCCAAGAGCAAATTGAGGCCCTGGAGAAAG
Seq A exon
AGTTTGAGAGAACCCATTATCCAGATGTGTTTGCCCGAGAAAGACTAGCGGCCAAAATAGATCTACCTGAAGCGAGAATACAG
Seq C2 exon
GTATGGTTTTCTAATCGAAGGGCCAAATGGAGAAGAGAAGAAAAGCTGAGGAATCAGAGAAGACAAGCCAGCAACACACCTAGTCATATTCCCATCAGCAGCAGTTTCAGCACCAGCGTCTACCAACCCATCCCACAACCCACCACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004561-'17-10,'17-9,18-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.982 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=31.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAATGCGACTTCAGCTGA
R:
CTAGGTGTGTTGCTGGCTTGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]