DreEX0053707 @ danRer10
Exon Skipping
Gene
ENSDARG00000103379 | pax6a
Description
paired box 6a [Source:ZFIN;Acc:ZDB-GENE-990415-200]
Coordinates
chr25:14935653-14938233:-
Coord C1 exon
chr25:14938075-14938233
Coord A exon
chr25:14937543-14937625
Coord C2 exon
chr25:14935653-14935803
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTGTTTCCACCAGAGT
3' ss Score
8.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGTTGCCAACAGTCAGACGGAGGCGGTGAGAACACAAACTCAATAAGCTCCAATGGCGAGGACTCAGATGAGACCCAAATGAGGCTTCAGCTTAAACGAAAACTGCAAAGGAATCGCACTTCTTTCACACAAGAACAAATAGAAGCACTTGAAAAAG
Seq A exon
AGTTTGAAAGAACGCACTACCCTGACGTTTTTGCACGAGAAAGACTTGCTGCAAAAATAGATTTACCAGAAGCAAGAATACAG
Seq C2 exon
GTCTGGTTCTCAAACAGAAGAGCGAAATGGAGGAGGGAGGAAAAGTTAAGAAATCAAAGAAGACAAGCCAGTAATTCCTCAAGTCACATACCCATCAGCAGCAGCTTCAGCACAAGTGTCTATCAACCAATCCCTCAGCCCACAACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103379-'21-21,'21-19,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.699 A=0.697 C2=1.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(43.6=31.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=21.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAAAGGAATCGCACTTCT
R:
GACACTTGTGCTGAAGCTGCT
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]