HsaEX6010286 @ hg38
Exon Skipping
Gene
ENSG00000106331 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
Coordinates
chr7:127613022-127613881:-
Coord C1 exon
chr7:127613756-127613881
Coord A exon
chr7:127613450-127613532
Coord C2 exon
chr7:127613022-127613091
Length
83 bp
Sequences
Splice sites
3' ss Seq
GTGAGACTCGATCTCCGCAGAGT
3' ss Score
5.77
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTGTTTTGGCTCCAGCTGTCCTCACTCCCCATAGTGGCTCTGAGACTCCCCGGGGTACCCACCCAGGGACCGGCCACCGGAATCGGACTATCTTCTCCCCAAGCCAAGCAGAGGCACTGGAGAAAG
Seq A exon
AGTTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCTCTGCCTGAGGACACGGTGAGG
Seq C2 exon
GTCTGGTTTTCCAACAGAAGAGCCAAATGGCGTCGGCAAGAGAAGCTCAAGTGGGAAATGCAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106331-'6-11,'6-10,7-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.922 A=0.613 C2=0.701
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=39.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCTCACTCCCCATAGT
R:
CCCACTTGAGCTTCTCTTGCC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains