MmuEX6003263 @ mm10
Exon Skipping
Gene
ENSMUSG00000029706 | Pax4
Description
paired box 4 [Source:MGI Symbol;Acc:MGI:97488]
Coordinates
chr6:28444339-28445238:-
Coord C1 exon
chr6:28445113-28445238
Coord A exon
chr6:28444804-28444886
Coord C2 exon
chr6:28444339-28444408
Length
83 bp
Sequences
Splice sites
3' ss Seq
GAGAGCCTCTGTCTCTACAGAGT
3' ss Score
6.43
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CTGTGTTGGCTCCAGTTCTTCCCAGTCCCCACAGTAACTGTGGGGCTCCCCGAGGTCCCCACCCAGGAACCAGCCACAGGAATCGGACTATCTTCTCCCCGGGACAAGCCGAGGCACTGGAGAAAG
Seq A exon
AGTTTCAGCGTGGGCAGTATCCAGATTCAGTGGCCCGTGGGAAGCTGGCTGCTGCCACCTCTCTGCCTGAAGACACGGTGAGG
Seq C2 exon
GTTTGGTTTTCTAACAGAAGAGCCAAATGGCGCAGGCAAGAGAAGCTGAAATGGGAAGCACAGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029706-'5-8,'5-7,6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.616 C2=0.708
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(29.8=39.5)
A:
PF0004624=Homeobox=FE(47.4=100)
C2:
PF0004624=Homeobox=PD(19.3=45.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTCCAGTTCTTCCCAG
R:
TTTCAGCTTCTCTTGCCTGCG
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types