BtaEX6028900 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103201616-103206205:-
Coord C1 exon
chr4:103206095-103206205
Coord A exon
chr4:103203582-103203699
Coord C2 exon
chr4:103201616-103201787
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCAGAAATTCTCTCTTTCAGTTC
3' ss Score
8.12
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
CTGCAGGCCTCCAGAATCCCAGAAGACACCACCGAGAACACCGAGGGTGACAACTCTGGTCACATTGCTTCTGTAGGTGCCCATGGGGCTCAGGATGACCACGATCAAGAG
Seq A exon
TTCAACTTTGGAGACATCTTTGTGCATCAGGCCATTCACACGATCGAGTATTGCCTGGGCTGCATTTCCAACACAGCCTCCTACCTCCGGCTTTGGGCCCTCAGTCTGGCACATGCAC
Seq C2 exon
AACTGTCTGAAGTGCTCTGGACAATGGTGATGCACATTGGCCTTCGCACGCGAGGCTGGGGAGGACTCGTTGGGGTCTTCATCATTTTTGCCGTGTTCGCTGTTCTGACGGTAGCCATCCTTCTGATCATGGAGGGCCTCTCTGCTTTCCTGCATGCCCTGAGGCTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263-'26-25,'26-23,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(7.1=100)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCCAGAATCCCAGAAGA
R:
CAGAGAGGCCCTCCATGATCA
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]