RnoEX6013210 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65738630-65742407:-
Coord C1 exon
chr4:65742312-65742407
Coord A exon
chr4:65739819-65739936
Coord C2 exon
chr4:65738630-65738801
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAGAAAGTGCTCTGTTACAGTTC
3' ss Score
3.51
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTGCAGTCCTTCACGATCCATGAGGATGCCATGGAGGGCCCCTCTGTTAAGAAGACTGCAGGTGCCCATGGGACGAAGGAAGGACACGAGGAGGAG
Seq A exon
TTCAACTTTGGAGACATCTTTGTCCACCAAGCCATCCACACCATTGAGTACTGCCTGGGCTGCATCTCCAATACAGCCTCATATCTTCGGCTGTGGGCTCTCAGCTTGGCTCACGCAG
Seq C2 exon
AGCTGTCCGAGGTACTGTGGACCATGGTGATGAGCATCGGCCTTCGCCTCCGAGGCTGGGGAGGGCTCGTTGGTGTCTTCATCATTTTTGCCGTCTTCGCCGTCCTCACAGTTGCCATCCTCCTCGTTATGGAGGGCCTCTCAGCCTTTCTGCACGCCCTCCGGCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTCCTTCACGATCCAT
R:
GGCTGAGAGGCCCTCCATAA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]