DreEX0015933 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16813692-16821079:+
Coord C1 exon
chr3:16813692-16813799
Coord A exon
chr3:16818751-16818868
Coord C2 exon
chr3:16820908-16821079
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTTTTCTCTCTAGTTT
3' ss Score
11.1
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGAACGCAAAACTTTGGGGGAATCCATGTGGGTAACGGCCCAACAGAGGACGAAGCTGAGATAATCCAGCATGACCAGCTTTCCCAAAACACAGAAGAGGAGCCTGAG
Seq A exon
TTTAATTTTGCAGATGAAGCAGTGCATCAAGCCATTCACACTATAGAATACTGCTTGGGCTGCATCTCAAACACTGCGTCTTATCTACGGCTCTGGGCGCTGAGTCTGGCTCATGCCC
Seq C2 exon
AGCTCTCTGAGGTGCTGTGGTCAATGGTGATGCACATGGGTCTCTCTTCCAGGAGTTTTGGAGGATTCATTTTCCTGTCCATTATCTTTTGCTTTTTTGCTGTACTGACAGTGTTTATTCTGTTGGTCATGGAAGGTCTCTCTGCCTTTCTTCATGCTCTTAAATTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847-'22-25,'22-24,24-25
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGGGAATCCATGTGGG
R:
AGGCAGAGAGACCTTCCATGA
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]