MmuEX6003782 @ mm9
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38000466-38003117:-
Coord C1 exon
chr6:38003010-38003117
Coord A exon
chr6:38001444-38001561
Coord C2 exon
chr6:38000466-38000637
Length
118 bp
Sequences
Splice sites
3' ss Seq
TAGAAAATGCTCTGTTGCAGTTC
3' ss Score
4.67
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTGCAGTCTTTCACGATCCACGAGGATGCTGTGGAGGGTGACCACTCGGGCCACTCTTCTAAGAAGACTGCAGGTGCCCATGGGATGAAGGACGGCCATGAGGAGGAG
Seq A exon
TTCAACTTTGGAGACATCTTTGTCCACCAAGCCATTCACACCATTGAGTACTGCCTAGGCTGCATCTCTAATACAGCCTCGTACCTTCGGCTCTGGGCCCTCAGCTTGGCTCACGCTG
Seq C2 exon
AGCTGTCCGAGGTGCTCTGGACCATGGTCATGAGCATCGGCCTTCGCCTTCAAGGCTGGGCAGGGCTCGTTGGTGTCTTCATCATTTTTGCGGTCTTCGCCGTCCTCACCGTGGCCATCCTCCTTGTCATGGAGGGTCTCTCAGCCTTTCTGCACGCCCTCCGGCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(4.9=100)
C2:
PF0149614=V_ATPase_I=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCTTTCACGATCCACGA
R:
AGACCCTCCATGACAAGGAGG
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: