BtaEX6028957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017793 | KLRG2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:24778]
Coordinates
chr4:103808245-103814789:-
Coord C1 exon
chr4:103814009-103814789
Coord A exon
chr4:103808787-103808888
Coord C2 exon
chr4:103808245-103808390
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTCCCCTCCCCTCCTCCCAGGGC
3' ss Score
10.88
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
CCCGGAGCCGCCGTCTCCGGACCCCGCCGCGGCCGAGCAGCCCCGGGACGGCGAGACGCCGGAGACCGAGCTGATACCCAAGGCAGCGCCGGGTGAGCCAGCTCCGGGCGCCTGGACCCCGGTGGAACTGCAGGTAGACGTGCGCGTGAAGTCTGTGGGCACGGCCGGCGGCAGCCGCGCGCCCTCGCCGGCGCCCTCCACGCGCTTCCTCACCGTCCCAGTGCCCGAGTCCCCGGGCTTCTCCCGCCACGCCTCCCCCGCGCACACCCTCCTGCGGCGGACCCCGTCCCCGGGAGGCACGTGGGGCCGCGGCACGCCGCCGGCCGCCGCCGGGACTGAGCGCGGCCTCGACGTCGAGGGCTGCGCCAGTCCCGCGGAGGGGCGCGCAGAGTCCTCGGGCTCCCCTATGTGCCGCTGCCGCTGCCGGGAGGACTCCGTGCTCCTGCCCCACGCCGAGCTGGACGGAGACAAGAAGATGTCCCGGATCATAAAGCGCGTAG
Seq A exon
GGCTGCCCATGTACATGAGGTCCCTGCGCTGGGCCCTGGCAGTCATGGCCGTGCTCCTGGCGGTGTTGGCGGTGGCTGTTGTGGCCTTGGCCTCGAAAACAG
Seq C2 exon
GGATCAGATGCCGACCATGCCCCCAGGGCTGGATGTGGTCCGAGGGGCAGTGCTACTACCTCGCTGCCGAAGCCGAGGCCTGGGAGACCAGCCAGGCTTTCTGCTCAGCCCACCAGGCTACCCTACCCCTGCTGAGACACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017793-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(25.8=51.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCGGGCTCCCCTATG
R:
GTCTCAGCAGGGGTAGGGTAG
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]