HsaEX0034928 @ hg38
Exon Skipping
Gene
ENSG00000188883 | KLRG2
Description
killer cell lectin like receptor G2 [Source:HGNC Symbol;Acc:HGNC:24778]
Coordinates
chr7:139479627-139483712:-
Coord C1 exon
chr7:139482886-139483712
Coord A exon
chr7:139480146-139480247
Coord C2 exon
chr7:139479627-139479772
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTGCCCCCGTCCCAGGGC
3' ss Score
7.3
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTACGGGGTCTGCCCCGAGCCGCCGTCACCGGGCCCTGCCTTGGTCAAGCTGCCCCGGAATGGCGAGGCGCCCGGGGCTGAGCCTGCGCCCAGCGCCTGGGCGCCCATGGAGCTGCAGGTAGATGTGCGCGTGAAGCCCGTGGGCGCGGCCGGTGGCAGCAGCACGCCATCGCCCAGGCCCTCCACGCGCTTCCTCAAGGTGCCGGTGCCCGAGTCCCCTGCCTTCTCCCGCCACGCGGACCCGGCGCACCAGCTCCTGCTGCGCGCACCATCCCAGGGCGGCACGTGGGGCCGCCGCTCGCCGCTGGCTGCAGCCCGGACGGAGAGCGGCTGCGACGCAGAGGGCCGGGCCAGCCCCGCGGAAGGAAGCGCCGGCTCCCCGGGCTCCCCCACGTGCTGCCGCTGCAAGGAGCTGGGGCTGGAGAAGGAGGATGCGGCGCTGTTGCCCCGCGCGGGGTTGGACGGCGACGAGAAGCTGCCCCGGGCCGTAACGCTTACGG
Seq A exon
GGCTACCCATGTACGTGAAGTCCCTGTACTGGGCCCTGGCGTTCATGGCTGTGCTCCTGGCAGTCTCTGGGGTTGTCATTGTGGTCCTGGCCTCAAGAGCAG
Seq C2 exon
GAGCCAGATGCCAGCAGTGCCCCCCAGGCTGGGTGTTGTCCGAGGAGCACTGTTACTACTTCTCTGCAGAAGCGCAGGCCTGGGAAGCCAGCCAGGCTTTCTGCTCAGCCTACCACGCTACCCTCCCCCTGCTAAGCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188883-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.863 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(25.8=51.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCTGGAGAAGGAGG
R:
CTGGGTGTGGCTTAGCAGG
Band lengths:
234-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development