MmuEX6003831 @ mm9
Exon Skipping
Gene
ENSMUSG00000071537 | Klrg2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:MGI Symbol;Acc:MGI:1921503]
Coordinates
chr6:38579764-38587239:-
Coord C1 exon
chr6:38586376-38587239
Coord A exon
chr6:38580281-38580382
Coord C2 exon
chr6:38579764-38579909
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGTTTGCTCTCCAGGGC
3' ss Score
11.3
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
CCTGGGCTCGTGCAGCCGCGAGCTGCCGTCTCCGAGCCCCTCGTGGGCCGAGCAGCCCCGGGATGGAGAGGCGGAGCTGGAGCCCTGGACGGCGTCAGGAGAGCCCGCACCCGCGTCCTGGGCGCCCGTGGAGCTGCAGGTGGACGTGCGCGTGAAGCCCGTGGGCGCGGCTGGGGCTAGTCGCGCGCCCTCGCCTGCGCCGTCCACGCGCTTTCTCACCGTGCCAGTGCCCGAATCGCCAGCCTTCGCCCGCCGCTCCGCTCCCACGCTCCAGTGGCTGCCCCGCGCCCCGTCACCAGGCTCCACGTGGAGCCGAGGATCGCCGCTTGCCGCGAACGCCACCGAGTCTGTCAGCCCCGCTGAGGGTTGCATGGTCCCCCCGGGCTCGCCCGCCTGCCGCTGCCGCTGCCGCGAGCCCGGACTGACCAAAGAAGATGACGCGCTGCTGCAGCGCGCAGGCATAGATGGCAAGAAACTGCCGCGGGCCATCACGCTCATAG
Seq A exon
GGCTGCCCCAGTACATGAAGTCTCTGCGCTGGGCTCTGGTGGTCATGGCTGTGCTGCTGGCTGTCTGCACTGTAGCTGTTGTGGCCCTGGCCTCTAGAGGAG
Seq C2 exon
GAACCAAGTGCCAACCATGCCCTCAAGGCTGGATGTGGTCTCAGGAACAATGCTACTACCTCTCTGAAGAAGCCCAAGACTGGGAGGGCAGCCAGGCATTCTGCTCAGCCCATCATGCCACACTGCCTCTGCTGAGCCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071537-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(25.8=51.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGGTTGCATGGTCC
R:
ATGATGGGCTGAGCAGAATGC
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: