RnoEX0047534 @ rn6
Exon Skipping
Gene
ENSRNOG00000006814 | Klrg2
Description
killer cell lectin like receptor G2 [Source:RGD Symbol;Acc:1587495]
Coordinates
chr4:66375455-66380734:-
Coord C1 exon
chr4:66380038-66380734
Coord A exon
chr4:66375975-66376076
Coord C2 exon
chr4:66375455-66375600
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTGTTCCTTCTCCAGGGC
3' ss Score
12.36
5' ss Seq
GCGGTATGG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CTCGTGCAGCCGCGAGCTGCCGTCCCCGAGCCACTCGTGCACCGAGCAGCCCCGGAATGGCGAAGGGGAGCTGGAGCCTTGGACCGCGTCAGGAGAGCCCGCGCCGGGATCCTGGGCGCCCGTGGAGCTGCAGGTGGACGTGCGCGTGAAGCCGGTGGGCGCCGCTGGGGCTAGTCGCGCGCCCTCGCCTGCGCCGTCCACGCGCTTCCTCACCGTTCCAGTGCCGGAATCGCCAGCCTTTGCCCGCCGCTCGGCTCCCACTCCCCAGTGGCTGCCGCGCGCCCCGTCACCCGGCTCCACGTGGAGCCGAGGATCGCCGCTTGCCGCGACCCCGACGGAGCCTATCGGCCCCGCTGAGGGCTGCACCGTTCCCCCAGGCTCGCCCCCCTGCCGCTGCCGCTGCCCCTGCCGCGAGCCCGGGCTGACCAAGGAGGACGATGCACTGCTGCAGCGCGTAGGCCTAGATGGCAAGAAACTGCCGCGGGCCATCACGCTCATAG
Seq A exon
GGCTGCCCCAGTACATGAAGTCTCTGCGCTGGGCTCTGGTGGTCATGGCTGTGTTGCTAGCAGTCTGCACTGTGGCGATTGTGGCACTGGCCTCTAGAGGCG
Seq C2 exon
GAGCCAAATGCCAACCGTGCCCTCAAGGCTGGATGTGGTCTCAGGAACACTGTTACTACCTCTCTGAAGAAGTCCAAGACTGGGAGAGCAGCCAAGCATTTTGCTCAGCCCACCAGGCCACACTGCCTCTGCTGAACCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006814-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PU(25.8=51.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGCTGCACCGTTC
R:
GCAAAATGCTTGGCTGCTCTC
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]