BtaEX6028959 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017793 | KLRG2
Description
killer cell lectin-like receptor subfamily G, member 2 [Source:HGNC Symbol;Acc:HGNC:24778]
Coordinates
chr4:103799172-103808390:-
Coord C1 exon
chr4:103808245-103808390
Coord A exon
chr4:103799775-103799878
Coord C2 exon
chr4:103799172-103799292
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCACTGCTTTCCTCCCTCAGGAT
3' ss Score
11.19
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGATCAGATGCCGACCATGCCCCCAGGGCTGGATGTGGTCCGAGGGGCAGTGCTACTACCTCGCTGCCGAAGCCGAGGCCTGGGAGACCAGCCAGGCTTTCTGCTCAGCCCACCAGGCTACCCTACCCCTGCTGAGACACACCCAG
Seq A exon
GATTTCCTGAGCAGACACCCGGTCACCAGGTACTCCTGGGTGGGAGCCCGACGAGGCCCCCAGGGCTGGCACTGGATCGACGGGACCCCCCTGCCACCCCAGCT
Seq C2 exon
GCTCCCAGAGGAAGACCAGGACCAGCCAGATCTCGAGTGCGGGTGCCTGGAGGGAGGCAAGCTGGTGGCTTCGGACTGTGCCTCCCCCAGACCCTGGGTCTGTGCCAAGGGCACCAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017793-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.125
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(25.8=51.0)
A:
PF0005916=Lectin_C=FE(35.1=100)
C2:
PF0005916=Lectin_C=PD(37.1=87.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGATGCCGACCATGCC
R:
CTTGGCACAGACCCAGGGT
Band lengths:
254-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]